Assembly stats
A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
/home/randi/Analysis/AMRid/illumina/assembly_stat
General Statistics
| Sample Name | N50 (Kbp) | Assembly Length (Mbp) |
|---|---|---|
| SRR3742286_contigs | 127.9Kbp | 5.3Mbp |
| SRR4178797_contigs | 124.1Kbp | 5.4Mbp |
| SRR7286262_contigs | 218.3Kbp | 5.0Mbp |
QUAST
Quality assessment tool for genome assemblies.URL: http://quast.bioinf.spbau.ruDOI: 10.1093/bioinformatics/btt086
Assembly Statistics
| Sample Name | N50 (Kbp) | L50 (K) | Largest contig (Kbp) | Length (Mbp) |
|---|---|---|---|---|
| SRR3742286_contigs | 127.9Kbp | 0.0K | 480.5Kbp | 5.3Mbp |
| SRR4178797_contigs | 124.1Kbp | 0.0K | 321.5Kbp | 5.4Mbp |
| SRR7286262_contigs | 218.3Kbp | 0.0K | 739.9Kbp | 5.0Mbp |
Number of Contigs
This plot shows the number of contigs found for each assembly, broken down by length.