Assembly stats

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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411
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        About MultiQC

        This report was generated using MultiQC, version 1.30

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

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        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        Assembly stats

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2025-09-17, 00:43 WIB based on data in: /home/randi/Analysis/AMRid/illumina/assembly_stat

        General Statistics

        Showing 3/3 rows and 2/2 columns.
        Sample NameN50 (Kbp)Assembly Length (Mbp)
        SRR3742286_contigs
        127.9Kbp
        5.3Mbp
        SRR4178797_contigs
        124.1Kbp
        5.4Mbp
        SRR7286262_contigs
        218.3Kbp
        5.0Mbp

        QUAST

        Quality assessment tool for genome assemblies.URL: http://quast.bioinf.spbau.ruDOI: 10.1093/bioinformatics/btt086

        Assembly Statistics

        Showing 3/3 rows and 4/4 columns.
        Sample NameN50 (Kbp)L50 (K)Largest contig (Kbp)Length (Mbp)
        SRR3742286_contigs
        127.9Kbp
        0.0K
        480.5Kbp
        5.3Mbp
        SRR4178797_contigs
        124.1Kbp
        0.0K
        321.5Kbp
        5.4Mbp
        SRR7286262_contigs
        218.3Kbp
        0.0K
        739.9Kbp
        5.0Mbp

        Number of Contigs

        This plot shows the number of contigs found for each assembly, broken down by length.

        Created with MultiQC

        MultiQC v1.30 - Written by Phil Ewels, available on GitHub.

        This report uses Plotly, jQuery, jQuery UI, Bootstrap and FileSaver.js.